Genome 540 Homework Assignment 2

Due Sunday Jan. 25

For the same bacterium you used in assignment 1:
  1. Write a program that
  2. Write a program to find a list of non-overlapping predicted coding sequences in your organism. Specifically, this should
  3. Run the program you wrote in #1 above on the FASTA file you generated in #2, so as to print out a codon usage table for the open reading frames you found.
  4. Email the output from #1 and #3 (but not #2) to me at AND Chris at Please make it as compact as possible. Do NOT send the code itself. Include the output in the body of your email message (as plain text), NOT as an attachment.