Assignment: GS540 HW7
Name: Benjamin Vernot
Email: bvernot@gmail.com

Fasta:
>gi|206900094|ref|NC_011297.1| Dictyoglomus thermophilum H-6-12, complete genome

Iteration 1:

Top Strand Genes: 10
Bottom Strand Genes: 13

Initial State Probabilities:
1=9.000e-1
2=5.000e-2
3=5.000e-2

Transition Probabilities:
1,1=9.990e-1
1,2=1.000e-3
2,1=2.100e-1
2,2=7.900e-1

Emission Probabilities:
1,A=2.500e-1
1,C=2.500e-1
1,G=2.500e-1
1,T=2.500e-1
2,A=3.000e-1
2,C=2.500e-1
2,G=2.500e-1
2,T=2.000e-1

Iteration 2:

Top Strand Genes: 10
Bottom Strand Genes: 13

Initial State Probabilities:
1=9.000e-1
2=5.000e-2
3=5.000e-2

Transition Probabilities:
1,1=9.990e-1
1,2=1.000e-3
2,1=2.100e-1
2,2=7.900e-1

Emission Probabilities:
1,A=2.500e-1
1,C=2.500e-1
1,G=2.500e-1
1,T=2.500e-1
2,A=3.000e-1
2,C=2.500e-1
2,G=2.500e-1
2,T=2.000e-1


Gene Annotation 1:
Strand: Forward
Start: 301
End: 1258
Genbank: GyrB, Encodes DNA topoisomerase IV subunit B


Program:

INCLUDE YOUR CODE HERE