Assignment: GS 540 HW2
Name: Maxwell Libbrecht
Email: maxwl@u.washington.edu

Part 1
Score: 8
Begin: vi
End: ii
Path: ID

Part 2
Score: 4
Begin: vii
End: i
Path: LIDA

Part 3
>gi|18976372|ref|NC_003413.1| Pyrococcus furiosus DSM 3638, complete genome
A=565156
C=388629
G=389365
T=565106
*=1908256
Score: 50.22
Begin: 9569
End: 9890
Path: GGCGGCGGGCTAGGCCGGGGGGTTCGGCGTCCCCTGTAACCGGAAACCGCCGATATGCCGGGGCCGAAGCCCGGGGGGCGGTTCCCAAAGCCGCTCCCAGAAGCCGAGGTCGAACGATGAGTCCTCGTCCCGCGGGGTGCCCGGTGGGGGAGGCACGGCTGAAGGGCCGTGCTAACCCCCTTTGGGCCCCGAACCCCGCAAGGCCCGGAAGGGAGCAGCGGTAGGGGCCACGGAGCACGCTCGCGGGGGTGCGGGGATGAGATAGGCCTCGGTGGATGGGAGCGGTGGAGGGTTCCCACCCTCGGGCGTGCCCGCCGCCGC
Description: This sequence corresponds to the structural RNA gene PF_s001

Program 1:

int main() {
	do_analysis();
	return 0;
}

Program 2:

int main() {
	do_analysis();
	return 0;
}