Assignment: GS540 HW4 Name: Email: Nucleotide Histogram: A=1338716 C=301269 T=1346202 G=305651 N=38 Background Frequency: A=0.4078 C=0.0922 G=0.0922 T=0.4078 Count Matrix: -10 322 48 72 338 -9 292 44 76 368 -8 344 43 70 323 -7 338 59 74 309 -6 333 48 87 312 -5 389 52 64 275 -4 394 115 53 218 -3 610 36 46 88 -2 496 59 64 161 -1 469 42 81 188 0 777 1 1 1 1 1 1 1 777 2 1 1 777 1 3 368 56 252 104 4 391 123 112 154 5 277 64 96 343 6 360 66 204 150 7 390 79 94 217 8 315 90 97 278 9 344 91 144 201 10 324 104 82 270 Frequency Matrix: -10 0.4128 0.0615 0.0923 0.4333 -9 0.3744 0.0564 0.0974 0.4718 -8 0.4410 0.0551 0.0897 0.4141 -7 0.4333 0.0756 0.0949 0.3962 -6 0.4269 0.0615 0.1115 0.4000 -5 0.4987 0.0667 0.0821 0.3526 -4 0.5051 0.1474 0.0679 0.2795 -3 0.7821 0.0462 0.0590 0.1128 -2 0.6359 0.0756 0.0821 0.2064 -1 0.6013 0.0538 0.1038 0.2410 0 0.9962 0.0013 0.0013 0.0013 1 0.0013 0.0013 0.0013 0.9962 2 0.0013 0.0013 0.9962 0.0013 3 0.4718 0.0718 0.3231 0.1333 4 0.5013 0.1577 0.1436 0.1974 5 0.3551 0.0821 0.1231 0.4397 6 0.4615 0.0846 0.2615 0.1923 7 0.5000 0.1013 0.1205 0.2782 8 0.4038 0.1154 0.1244 0.3564 9 0.4410 0.1167 0.1846 0.2577 10 0.4154 0.1333 0.1051 0.3462 Weight Matrix: -10 0.0176 -0.5831 0.0019 0.0876 -9 -0.1235 -0.7086 0.0799 0.2102 -8 0.1129 -0.7417 -0.0387 0.0221 -7 0.0876 -0.2854 0.0414 -0.0419 -6 0.0661 -0.5831 0.2749 -0.0279 -5 0.2903 -0.4676 -0.1680 -0.2100 -4 0.3087 0.6775 -0.4401 -0.5451 -3 0.9394 -0.9981 -0.6445 -1.8539 -2 0.6409 -0.2854 -0.1680 -0.9824 -1 0.5601 -0.7757 0.1718 -0.7587 0 1.2885 -6.1680 -6.1680 -8.3133 1 -8.3133 -6.1680 -6.1680 1.2885 2 -8.3133 -6.1680 3.4338 -8.3133 3 0.2102 -0.3607 1.8093 -1.6129 4 0.2977 0.7745 0.6393 -1.0465 5 -0.1996 -0.1680 0.4169 0.1087 6 0.1785 -0.1236 1.5044 -1.0845 7 0.2940 0.1358 0.3866 -0.5518 8 -0.0141 0.3238 0.4319 -0.1944 9 0.1129 0.3398 1.0019 -0.6623 10 0.0265 0.5324 0.1895 -0.2365 Maximum Score: 16.7500077944 Score Histogram CDS: -3 1 -2 1 0 7 1 9 2 21 3 22 4 52 5 57 6 96 7 91 8 113 9 121 10 81 11 61 12 34 13 8 14 1 Score Histogram All: -5 101880 -4 76413 -3 54704 -2 38081 -1 27202 0 21440 1 18671 2 18825 3 19072 4 18675 5 17308 6 14429 7 10595 8 6915 9 3886 10 1850 11 699 12 225 13 46 14 4 lt-5 6132782 Position List: 1899 0 10.1167 2274 0 10.1923 2502 0 10.1098 4646 0 10.5886 5252 0 10.5534 6127 0 11.0669 7250 1 10.0453 11016 1 10.1616 11526 1 11.0445 12302 1 10.0415 13470 0 10.3188 13669 0 10.3913 14168 1 10.4336 14636 1 12.2838 14732 1 12.3326 15834 1 10.3431 17511 1 10.1254 18986 1 10.0176 20936 1 10.4336 21010 0 10.4349 21602 1 11.9065 25003 1 12.8511 27428 0 10.4577 29715 0 11.4640 30223 1 11.6579 31800 1 11.0776 34338 1 10.7359 38384 0 10.6826 39603 0 11.0775 39654 0 10.3543 40024 0 10.3663 41869 1 10.7474 42120 1 11.1267 49395 1 10.7641 53335 1 10.5939 56139 1 10.9992 57268 1 10.7999 57482 1 11.5467 58219 0 10.3711 61944 1 10.1790 63285 1 12.1814 63296 1 11.7742 67191 0 10.0456 71462 0 10.6219 72373 1 11.9542 74551 1 10.7999 74736 1 12.3845 74779 1 10.0747 75189 1 10.0787 78709 1 10.3237 79591 0 10.3008 81317 0 10.5683 82258 0 10.2201 82667 0 10.4309 82916 1 10.8897 83372 0 10.2497 83415 1 11.0226 84770 0 10.6295 86671 1 10.6234 87229 1 10.1230 90396 1 10.0763 90520 1 11.1882 93235 1 10.4324 94698 1 12.1897 95191 1 10.8234 100437 1 10.4290 100866 0 10.8459 101017 1 11.2356 101030 1 10.0257 102782 1 11.6781 103083 0 11.0496 109837 1 10.8491 110759 0 10.1667 110840 0 10.0804 110852 0 10.7859 110864 0 10.9947 110876 0 10.9947 110888 0 10.9947 111949 1 12.1138 112045 0 10.9630 112446 0 11.6506 113160 1 11.2867 113281 1 10.7385 113308 1 11.8786 113602 1 11.9523 114193 1 10.3831 115294 1 11.8285 116040 1 11.1421 116260 1 10.3283 117288 1 11.8861 117937 1 10.1787 118618 1 10.6780 120106 1 10.3763 120208 1 12.5861 120927 1 10.0265 121518 1 11.4583 123687 1 10.2426 126250 0 10.2577 126717 0 11.0916 128934 0 10.3065 130830 0 11.0922 131254 0 11.0854 131363 1 12.0363 132739 0 10.3354 134697 1 10.9675 137377 1 10.4971 138293 1 10.3434 138806 0 12.4773 139039 1 10.6951 139361 1 10.5503 139443 1 10.4232 140228 1 12.4783 141183 0 10.0681 141189 0 10.7996 142676 1 10.5012 144358 1 10.4148 150291 0 11.0346 152014 0 11.8713 153437 0 10.3706 154446 0 10.2368 155429 0 10.6070 155794 1 10.3922 155995 1 11.2886 156918 1 11.9274 157486 0 10.9643 158855 1 11.3720 164062 1 10.4536 164788 1 10.5056 164799 1 11.1027 165663 1 11.5708 165990 1 10.3313 169698 1 13.4041 170118 0 10.2220 170246 0 12.5966 170414 0 10.3143 171140 1 11.8262 172296 0 11.3368 172494 1 13.8263 173369 0 11.1602 174838 0 11.6958 175042 1 10.8373 175637 1 11.1081 176568 0 10.4316 177035 1 10.6713 178834 1 10.6211 182202 0 11.3299 182682 0 10.2796 182763 0 10.6008 185213 0 10.8431 185508 1 10.5686 186161 1 12.0956 187061 1 10.6883 189371 1 10.6551 191610 0 10.4791 191718 0 10.8321 192680 0 10.0896 196580 1 12.5690 196784 1 10.9955 197367 0 10.5814 199364 1 10.1672 199495 0 10.5820 201803 1 11.4400 202140 1 11.1962 202230 1 12.4241 203948 1 12.3781 204133 1 11.7847 204525 0 10.5680 204973 0 11.0192 208571 0 10.1743 208578 0 10.0170 210886 0 11.4038 212204 1 11.6262 215091 1 12.7848 215876 1 10.1481 215894 1 10.6344 216149 0 10.2261 217936 0 10.0940 218173 0 10.6870 218856 0 10.4336 219712 0 10.0666 221901 1 10.1928 222160 0 11.3259 222834 0 10.1762 223183 0 10.0117 223671 0 11.4071 223686 0 10.4872 226266 0 11.9668 229430 1 10.9061 230767 1 10.7699 230775 1 10.1298 231981 1 12.4599 232020 0 10.5982 233849 0 11.1553 234195 1 11.5432 234510 1 11.9506 235007 1 10.6680 235785 1 10.4468 235829 1 10.1371 236469 1 10.6417 237006 1 12.4843 237404 1 10.1649 239080 1 10.0738 240425 0 10.1521 241254 1 11.4732 243775 0 10.0989 245305 0 10.5952 245440 0 11.5811 246852 1 10.8194 247564 1 10.1674 247786 0 10.1076 247920 0 11.3025 253034 1 10.1015 259013 1 10.8102 259958 1 10.2280 261856 1 10.6245 262656 0 10.0104 263404 0 10.0386 263529 0 10.3368 263604 1 10.1561 263698 1 10.2300 265735 1 10.5036 267182 1 10.9895 267808 0 10.9331 268210 1 10.4018 268226 1 10.2145 268233 1 10.6540 268373 1 10.4783 268496 1 11.7621 271391 1 11.9131 273425 1 10.4664 273649 1 11.9851 273889 1 10.0336 273907 1 10.0336 274583 1 11.0009 274819 1 10.1708 275431 1 12.2761 275537 1 11.3057 275552 1 11.1300 277942 0 10.5292 278647 1 11.3295 279566 1 10.5666 281178 1 10.0985 283654 0 10.8216 285082 1 10.7509 288389 0 11.3697 291549 0 10.7263 294048 0 10.5004 299978 1 10.3273 300476 0 10.2799 300485 0 10.1312 300877 1 10.3785 301462 1 11.6465 301800 1 10.5720 301818 1 10.7841 302337 1 10.0997 302991 1 10.0355 303426 1 10.3833 303702 1 11.0308 304711 1 10.8463 305683 1 10.6278 313180 0 11.2648 313972 1 10.4971 316397 1 10.1747 316727 1 10.9395 316889 1 11.4920 317511 0 12.2738 326221 1 10.2172 327121 1 10.2199 327910 1 10.0090 327946 1 10.0472 328108 1 10.2054 328129 0 10.0484 328615 1 10.3713 329268 0 10.0785 331161 1 11.0078 332515 1 12.2500 333484 1 10.0903 333651 1 10.6914 333699 1 10.8857 334960 1 12.4969 335307 1 10.2270 336420 1 11.3765 337969 1 10.3601 338500 1 10.0982 338847 0 11.3511 340932 1 10.4576 340986 1 10.1234 341020 1 11.1437 341059 1 10.6036 341381 1 11.2942 342901 0 11.3831 344908 1 10.2378 345214 1 10.4960 346116 1 10.1280 349141 0 10.3695 350389 0 10.3646 350605 0 10.3939 356019 0 10.6425 356352 0 10.4809 357249 0 13.2441 357610 0 12.0257 359152 0 10.1093 359819 1 10.1719 360823 0 10.0307 363557 0 11.1348 367723 0 10.4586 370006 1 11.1928 370547 0 10.5627 371030 1 10.8059 373916 1 10.5895 375083 0 10.5017 378514 1 10.3321 378730 1 10.5042 379753 1 11.6925 379864 1 10.1693 380096 1 11.8056 383287 0 11.2651 383821 0 10.0010 383983 0 10.1645 384324 0 11.6739 385463 1 11.3344 385521 1 10.1954 385637 1 10.0906 387182 1 10.1706 389790 0 11.2194 389949 0 10.1961 389958 0 11.0850 389976 0 12.4054 392583 0 11.0403 393720 1 10.6048 397273 0 10.3878 397865 1 12.1773 400635 0 12.2579 400816 0 10.0841 405692 1 13.1554 405746 1 10.5784 408092 1 10.5907 408408 1 10.0638 409514 1 10.0809 409627 1 10.2171 410953 1 10.3668 411025 1 10.4129 411049 1 10.1143 411121 1 10.4129 411145 1 10.4129 411169 1 10.4129 411193 1 10.4129 411217 1 10.3668 411283 1 11.5479 411785 1 11.0278 413695 1 10.2302 414083 1 10.2090 415589 1 10.0498 415616 1 10.9272 417448 0 10.3554 421114 0 12.0347 421192 0 11.8449 421621 0 11.5039 423815 1 11.0630 428371 0 10.6158 432129 0 10.7720 432963 1 10.2166 434058 1 10.3208 436832 1 10.0755 439405 1 11.5087 439448 1 10.2257 444498 0 10.3087 444669 1 10.9111 445558 0 10.4747 446140 0 11.3040 447970 1 10.7645 451936 0 12.8304 452215 0 13.8186 454353 1 10.6092 454707 1 11.8629 454881 0 10.3512 460312 0 10.1743 462872 1 10.8061 463716 1 10.1532 463865 1 10.2355 465330 1 10.7638 466860 1 11.5399 466983 0 12.4925 467568 0 11.7873 469573 0 10.6701 470187 0 10.0541 470974 0 10.0667 471117 0 11.1098 472863 1 10.5288 472958 0 10.3008 473247 0 11.3652 473466 0 10.9797 473753 0 10.2921 473972 0 11.0852 475323 0 11.3945 475895 0 10.4815 476743 0 10.7888 476912 0 10.8961 477460 1 11.9435 482582 0 10.6921 482854 0 11.1903 483628 1 11.1517 484679 0 10.0652 485074 0 10.8715 487262 0 11.4013 489746 1 12.5563 489911 1 12.8570 490019 1 10.0830 491996 0 10.1987 494276 1 10.4108 495605 1 11.9230 496327 0 10.3564 496345 1 10.2410 496925 1 10.8831 496973 1 10.8831 496997 1 11.4541 497045 1 11.4541 497093 1 11.4541 497501 0 11.2163 498239 1 10.4443 498290 1 10.4960 498380 1 10.6270 499994 0 10.4601 500869 1 10.6240 501405 1 11.6547 503961 0 10.5744 506622 1 10.1032 507394 0 10.2736 507714 0 10.1641 509204 1 10.3696 509505 0 11.2253 509753 0 10.4763 510574 1 10.3471 511103 1 11.0588 511882 1 10.0761 512514 0 11.2510 513297 0 11.0201 513318 0 11.1110 513339 0 11.0201 513360 0 11.1110 513381 0 11.1110 513402 0 11.5878 513423 0 11.5878 513599 0 10.8648 514124 0 10.7697 516559 0 10.9799 516893 1 10.4502 517338 1 13.6895 522720 1 10.2667 523064 0 10.8795 523706 0 11.0234 524363 1 12.2737 525033 1 10.7840 530475 1 10.3875 530541 1 11.8391 531081 1 10.0455 531612 1 13.0568 533042 0 10.2501 533736 1 10.3905 534653 1 10.7644 534791 1 10.3149 535924 1 10.5466 537386 0 11.4618 537433 1 10.3403 537825 1 11.3309 539640 0 10.7895 539781 0 10.0277 540442 0 10.4336 541727 1 11.2793 542533 1 10.2040 542705 1 11.0826 542785 1 11.4077 543077 1 10.7907 543130 1 11.5891 543727 1 10.3525 545837 1 12.0326 545915 0 10.2336 546251 0 10.5964 548326 1 10.5244 548627 0 11.0174 548740 0 10.1166 551457 0 11.2707 551909 0 10.4614 557040 1 10.4420 557187 0 10.5207 559843 0 11.7107 560586 0 10.0359 561011 0 11.1852 561560 0 12.0567 562932 1 10.6816 563814 1 12.4507 564818 1 10.2118 569136 1 11.8711 569372 0 11.1657 569658 1 10.7184 571671 1 11.3544 573107 1 10.3118 576442 0 10.3568 576457 0 10.7008 578356 1 11.8626 578873 1 10.0315 578959 0 10.4137 581194 1 10.2468 581986 1 10.0051 583173 1 11.4389 583896 1 10.6131 585363 1 11.8692 585555 1 11.4928 585684 1 11.0835 586095 1 11.0505 587282 1 10.6715 587301 1 11.2606 590714 0 11.4763 591321 0 10.0836 592018 0 10.7573 594208 1 11.0445 595102 1 10.2074 595290 1 10.2428 595828 1 12.3332 597266 0 10.4149 600653 1 10.9725 602281 1 10.4426 603025 1 11.3021 603154 1 10.7429 604817 1 10.6083 607137 1 11.4444 608337 0 10.4946 610083 0 10.9546 613572 0 11.4175 616749 0 10.3704 619337 0 12.2408 619471 0 10.1057 620328 0 10.2211 621627 0 11.6011 621699 0 10.2717 622134 0 10.1187 622142 0 11.1414 624244 0 10.2262 625024 0 10.1750 625815 1 10.1176 626208 1 10.0042 627055 1 10.1773 627281 1 12.3204 629768 1 11.1359 630581 1 10.0182 632555 1 10.5727 632677 1 10.4843 632792 1 11.7300 632913 1 10.0892 635647 1 10.8999 638720 1 11.0013 642529 1 10.2464 647821 1 10.1658 648385 1 11.5624 653756 1 10.5739 654164 1 10.7457 654481 1 10.8007 654601 1 10.3748 655411 1 11.1444 655559 1 10.8260 656150 1 10.7806 658548 1 10.8279 659844 0 11.5037 660725 1 10.8816 666849 1 10.5834 667385 1 10.5373 668486 0 10.6217 670905 1 10.3912 671003 1 10.1210 671831 1 10.5322 672200 1 10.7357 672755 1 10.3300 675089 1 10.0686 675186 1 12.4577 675604 1 11.0754 675812 1 11.2811 675941 1 10.5998 676674 1 10.6973 681229 1 11.3498 682757 0 10.9692 683059 1 10.7850 683123 0 11.7814 683348 1 12.8616 683440 0 10.0996 684508 0 10.7272 684915 1 10.4079 686031 1 11.9469 689573 0 10.8062 690308 1 11.5087 691216 0 10.3395 696364 0 10.4446 696717 0 10.3598 697963 0 10.9539 697977 0 11.2264 698808 0 10.6686 699754 0 10.9888 700576 0 10.1495 700743 0 10.0817 701613 1 11.6814 701727 0 10.3628 701793 0 10.3551 703008 0 10.7466 704666 0 11.2877 706011 0 11.5389 706155 0 10.2777 707356 0 10.0712 709209 1 10.1348 710114 1 10.5446 711299 0 11.9963 712448 0 10.2016 714176 1 11.2785 714707 0 12.2447 715256 0 10.7739 719558 0 10.8604 719735 0 10.0441 720858 0 11.0002 721041 0 11.2239 729787 0 10.5798 731046 1 12.2300 731878 1 10.7716 735332 1 10.5227 735383 0 12.6425 735843 1 10.2865 737206 1 10.7418 737504 1 10.2294 738384 1 11.5675 738471 0 10.7154 739134 1 10.3715 739219 1 11.9073 739493 1 10.0870 739505 1 10.3087 740541 1 10.8767 741830 1 10.7611 742346 1 10.5911 742646 1 10.8080 742703 1 10.1688 743985 1 11.6499 748269 1 10.0561 752578 0 10.6561 753600 0 11.6111 755408 0 11.2162 757190 1 11.8090 757253 1 11.5738 760921 0 10.1814 764644 1 10.8756 764697 1 11.6905 768232 1 10.7408 768513 1 11.4864 769259 1 10.7555 769766 1 11.1228 773333 1 12.0437 776282 0 10.9685 776355 0 11.9667 776911 0 11.3666 779494 1 10.2317 779683 1 10.4100 780123 1 10.6803 781033 1 10.2317 783735 1 10.0585 785115 1 10.7841 788126 1 11.5622 789536 1 10.5130 789862 1 10.8059 789886 1 10.0421 789898 1 10.8059 789922 1 10.7162 794409 0 10.1472 795315 0 10.5750 798609 1 10.4055 799891 0 11.7123 800661 1 11.0119 801073 0 10.9116 801790 1 10.1695 803200 0 10.1603 803726 1 10.4613 805382 1 10.4434 806729 1 10.4083 807188 1 11.4933 807461 0 10.3993 808119 1 10.3654 808779 1 12.2022 809001 1 10.5403 809613 1 11.1529 809640 1 10.2640 809667 1 10.2640 809721 1 10.7453 810743 1 10.3534 811217 1 10.4444 811626 0 10.3772 813797 1 10.0963 814126 1 10.3032 815646 1 10.2944 817447 1 10.3288 821135 1 11.5377 821473 1 10.4068 824155 1 11.8404 824312 0 10.2313 824443 0 10.2490 825816 1 10.2067 825942 1 11.2654 831801 1 10.0493 832432 0 10.3201 832702 0 11.0124 833552 1 10.1233 835178 1 10.6967 835386 1 10.2465 835460 1 10.5121 835886 1 11.7232 835911 0 10.7694 836400 1 12.0703 836996 0 11.0418 839140 0 10.7770 840498 1 10.6846 843929 0 10.2213 844502 0 10.7638 845696 0 10.2158 846746 0 11.1379 846786 0 10.7604 847548 0 10.7339 848949 0 10.0828 850929 1 11.3817 854459 1 11.2584 854786 1 10.1354 855097 0 10.8610 855744 1 10.8908 857608 1 11.1650 860973 0 10.2480 861940 0 11.9854 862037 0 10.1122 862689 0 10.8139 862701 0 11.3105 863866 1 10.9196 864661 1 10.1804 865038 0 10.0609 868702 1 10.2793 869647 0 10.2054 871666 0 10.2654 872781 0 10.1064 877435 1 12.1942 878335 1 10.2024 878414 1 11.4370 878665 1 11.0728 879776 1 10.2748 879859 1 10.7889 879880 1 11.1841 882466 0 10.1149 883760 1 10.0889 886010 0 11.8619 887306 0 10.0961 887795 0 10.7544 889810 1 12.4874 889999 0 11.6826 892440 1 11.5099 898013 1 11.0163 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