Assignment: GS540 HW5
Name: 
Email: 

Fasta:
>gi|206900094|ref|NC_011297.1| Dictyoglomus thermophilum H-6-12, complete genome

Iteration 1:

State Histogram:
1=5
2=3

Segment Histogram:
1=2
2=1

Initial State Probabilities:
1=0.9000
2=0.1000

Transition Probabilities:
1,1=0.9900
1,2=0.0100
2,1=0.2000
2,2=0.8000

Emission Probabilities:
1,A=0.2500
1,C=0.2500
1,G=0.2500
1,T=0.2500
2,A=0.3000
2,C=0.2500
2,G=0.2500
2,T=0.2000


Iteration 2:

State Histogram:
1=4
2=3

Segment Histogram:
1=3
2=1

Initial State Probabilities:
1=0.9000
2=0.1000

Transition Probabilities:
1,1=0.9990
1,2=0.0010
2,1=0.2100
2,2=0.7900

Emission Probabilities:
1,A=0.2500
1,C=0.2500
1,G=0.2500
1,T=0.2500
2,A=0.3000
2,C=0.2500
2,G=0.2500
2,T=0.2000


Segment List:
5 7
11 11
15 17

Annotation 1:
gene="purC"
locus_tag="DICTH_0002"
db_xref="GeneID:6946346"
 
Annotation 2:
locus_tag="DICTH_0003"
db_xref="GeneID:6945209"


Program:

INCLUDE YOUR CODE HERE