Assignment: GS540 HW8
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State Histogram:
1=5
2=3

Segment Histogram:
1=2
2=1

Initial State Probabilities:
1=0.90000
2=0.10000

Transition Probabilities:
1,1=0.99000
1,2=0.01000
2,1=0.20000
2,2=0.80000

Emission Probabilities:
1,AA-=0.20000
1,AAA=0.20000
1,AAC=0.20000
1,AAG=0.20000
1,AAT=0.20000
2,AA-=0.10000
2,AAA=0.20000
2,AAC=0.25000
2,AAG=0.25000
2,AAT=0.20000
etc..


Longest Segment List:

116741000 116752000
116745000 116756000
etc.. (give 10 longest from state 2)


Annotations:

Start: 116741000
End: 116752000
Overlaps with exon3 of the protein coding gene cMyc

Start: 116745000
End: 116756000
Overlaps with exon4 of the protein coding gene cMyc

etc.. (give 5 longest)


Program:

YOUR CODE HERE