Assignment: GS540 HW9
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State Histogram:
1=12340899
2=2304985

Segement Histogram:
1=342
2=341

Transition Probabilities:
1,1=0.99000000
1,2=0.01000000
2,1=0.20000000
2,2=0.80000000

Emission Probabilities:
1,0=0.20000000
1,1=0.20000000
1,2=0.20000000
1,>=3=0.40000000
2,0=0.10000000
2,1=0.30000000
2,2=0.30000000
2,>=3=0.30000000

Score Threshold: 0.5849639

Segment List:
87675 90565 4495.4
117898 117988 3756.5
3468687 4067688 5876.4
etc..

Annotations:

Start: 116741000
End: 116752000
Overlaps with exon3 of the protein coding gene cMyc

Start: 116745000
End: 116756000
Overlaps with exon4 of the protein coding gene cMyc

etc.. (give first 3)


Read Start Histogram:
0=1775757
1=4676597
2=46546545
>=3=767966

Read Start Histogram for Elevated CN Segments:
0=1775
1=4676
2=46565
>=3=76790


Program:

YOUR CODE HERE