Assignment: GS540 HW5
Name: Alex Eng
Email: engal@uw.edu
Language: C++
Time: 6.822 sec

Nucleotide Histogram:
A=1142742
C=1180091
G=1177437
T=1141382
N=0

Background Frequency:
A=0.2460
C=0.2540
G=0.2540
T=0.2460

Count Matrix:
-10 1436 299 2084 500
-9 1220 250 2411 438
-8 1577 349 1838 555
-7 1602 483 1409 825
-6 1464 630 1164 1061
-5 1448 768 893 1210
-4 1532 945 768 1074
-3 1813 786 987 733
-2 1124 1154 597 1444
-1 1169 1138 669 1343
0 3864 14 348 93
1 24 13 13 4269
2 14 24 4259 22
3 2127 684 871 637
4 1588 1225 715 791
5 1420 834 701 1364
6 1805 921 973 620
7 1826 835 566 1092
8 1335 831 904 1249
9 1525 1024 859 911
10 1322 935 548 1514

Frequency Matrix:
-10 0.3325 0.0692 0.4825 0.1158
-9 0.2825 0.0579 0.5582 0.1014
-8 0.3651 0.0808 0.4256 0.1285
-7 0.3709 0.1118 0.3262 0.1910
-6 0.3390 0.1459 0.2695 0.2457
-5 0.3353 0.1778 0.2068 0.2802
-4 0.3547 0.2188 0.1778 0.2487
-3 0.4198 0.1820 0.2285 0.1697
-2 0.2602 0.2672 0.1382 0.3343
-1 0.2707 0.2635 0.1549 0.3110
0 0.8947 0.0032 0.0806 0.0215
1 0.0056 0.0030 0.0030 0.9884
2 0.0032 0.0056 0.9861 0.0051
3 0.4925 0.1584 0.2017 0.1475
4 0.3677 0.2836 0.1655 0.1831
5 0.3288 0.1931 0.1623 0.3158
6 0.4179 0.2132 0.2253 0.1436
7 0.4228 0.1933 0.1310 0.2528
8 0.3091 0.1924 0.2093 0.2892
9 0.3531 0.2371 0.1989 0.2109
10 0.3061 0.2165 0.1269 0.3505

Weight Matrix:
-10 0.4344 -1.8751 0.9260 -1.0877
-9 0.1992 -2.1333 1.1363 -1.2787
-8 0.5695 -1.6520 0.7448 -0.9371
-7 0.5922 -1.1832 0.3613 -0.3652
-6 0.4622 -0.7999 0.0858 -0.0023
-5 0.4464 -0.5142 -0.2966 0.1873
-4 0.5277 -0.2149 -0.5142 0.0153
-3 0.7707 -0.4807 -0.1522 -0.5358
-2 0.0809 0.0733 -0.8775 0.4424
-1 0.1376 0.0532 -0.7133 0.3378
0 1.8624 -6.2918 -1.6562 -3.5143
1 -5.4685 -6.3987 -6.3987 2.0062
2 -6.2461 -5.5142 1.9572 -5.5941
3 1.0011 -0.6813 -0.3326 -0.7383
4 0.5795 0.1594 -0.6173 -0.4260
5 0.4182 -0.3952 -0.6458 0.3601
6 0.7643 -0.2521 -0.1728 -0.7774
7 0.7810 -0.3935 -0.9545 0.0393
8 0.3291 -0.4004 -0.2789 0.2331
9 0.5211 -0.0991 -0.3526 -0.2222
10 0.3150 -0.2303 -1.0011 0.5107

Maximum Score: 17.1171957283

Score Histogram CDS:
-24 2
-22 2
-20 2
-19 2
-18 4
-17 6
-16 5
-15 7
-14 5
-13 1
-12 3
-11 3
-10 3
-9 2
-8 2
-7 7
-6 3
-5 4
-4 4
-3 8
-2 7
-1 29
0 36
1 79
2 104
3 141
4 259
5 335
6 477
7 549
8 636
9 606
10 469
11 281
12 156
13 58
14 19
15 3

Score Histogram All:
-33 4
-32 65
-31 326
-30 1384
-29 4798
-28 13287
-27 30936
-26 60853
-25 106131
-24 164425
-23 232533
-22 302689
-21 369140
-20 426315
-19 470078
-18 502212
-17 526735
-16 543276
-15 551625
-14 551992
-13 539526
-12 514156
-11 478988
-10 433868
-9 389072
-8 347154
-7 308435
-6 273550
-5 237339
-4 202574
-3 167622
-2 134010
-1 103745
0 78670
1 59724
2 45784
3 34789
4 26111
5 18709
6 12851
7 8172
8 4673
9 2634
10 1341
11 617
12 233
13 84
14 25
15 4

Position List:
5088 0 11.9583
6594 0 10.6006
10617 0 10.3933
18721 0 10.2148
29400 1 10.9130
29613 0 10.9496
57255 0 11.6468
57633 1 11.3373
64295 1 11.0760
71980 1 13.4195
81486 1 10.5480
82794 1 10.3027
84263 1 12.2110
84289 1 10.0122
89101 0 10.1837
90895 0 10.5151
99822 1 10.4727
113244 0 12.4607
117476 0 10.1699
153857 0 10.6973
155115 0 11.8652
155397 0 10.2182
156963 0 11.1199
174600 1 10.2485
175897 1 10.4661
183503 1 13.0943
186075 0 12.3251
201095 1 11.0032
203808 0 10.2012
211530 0 10.6347
212057 1 10.8188
223701 0 10.9640
230930 1 10.1205
236213 1 10.6836
238297 1 10.8432
238533 0 10.2272
238558 0 11.6357
238684 0 11.6264
238790 1 11.0229
239084 1 10.1739
239190 0 10.3015
253239 0 13.3228
253240 1 10.2271
260106 1 10.0997
264792 1 10.0016
270186 1 10.1927
270519 0 10.6172
274001 1 10.1839
275081 1 11.4607
285308 0 10.5700
285410 0 10.4327
290370 1 12.2149
294097 1 10.0326
294209 0 11.4109
294351 1 10.6320
295212 0 10.3911
302115 0 10.6029
302862 0 11.4378
303422 1 11.0762
314920 1 13.3204
317302 1 10.1393
317463 0 11.2382
317560 0 10.4777
317577 1 12.3232
318404 1 10.5181
320144 0 10.2750
321381 0 10.5136
324766 0 10.4325
329154 1 10.2254
332669 0 10.5094
336629 1 11.9882
341263 0 10.6208
344327 0 10.0703
345229 0 10.7684
345509 0 11.1635
346593 0 10.0408
346930 1 10.4058
348566 1 10.4460
355071 1 12.8721
366394 0 10.0643
385014 0 10.3769
385104 1 10.0175
391029 0 10.3442
391407 0 10.2179
394591 0 11.6383
401179 1 11.4459
407235 1 11.1143
407871 0 10.3584
407905 1 11.0291
408947 0 12.4879
419305 1 10.6355
429049 1 11.6396
430935 0 10.9578
437405 1 10.8485
448889 1 10.7038
451312 0 11.6931
453747 1 10.5947
456502 1 10.4998
459476 0 10.5590
470058 1 12.2369
471416 1 10.6560
475131 0 10.1660
476293 1 12.7499
478154 0 10.5374
480143 1 11.0434
490150 1 10.3045
492208 1 10.5122
498636 1 10.9871
498742 0 10.2512
498941 0 15.2127
500126 1 10.0983
500752 0 12.1101
501175 0 14.3777
501538 1 13.3453
503332 0 10.2822
516526 0 10.1160
518363 1 10.0176
519110 1 11.5786
523202 1 12.0774
527222 0 12.1418
527614 1 10.3216
528430 0 10.0497
528701 1 10.6561
530438 0 11.9523
532973 1 11.3466
536371 0 11.2622
538731 0 10.7190
543512 1 10.1688
561165 0 10.2089
564456 1 10.7245
568244 0 10.6754
569878 0 10.2334
570647 0 10.3989
570930 1 11.9201
571206 0 11.4785
571499 0 10.0125
571902 0 11.0028
574637 1 10.1839
575717 1 11.4607
579234 0 10.6331
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584252 0 11.2973
587681 1 10.0835
592344 1 11.7862
594221 1 10.6310
595527 1 10.6848
596696 0 10.5194
605658 1 13.2667
615958 1 10.0096
618079 0 10.0344
624841 0 11.4009
624851 1 10.3044
625603 0 10.3452
635364 1 10.7977
636683 0 10.5535
637647 1 11.2002
643323 0 10.0433
643361 0 10.6947
643419 1 11.8989
646557 1 10.9518
651805 1 10.2391
652133 0 10.5955
653471 0 11.2732
656033 0 13.0565
659492 1 11.5764
661041 1 10.4394
661594 0 10.9195
675467 1 10.0201
676150 1 10.2780
676769 0 10.1660
678939 0 11.3869
680396 0 11.1592
681560 0 10.2103
687219 1 10.8558
687897 1 10.1839
688977 1 11.4607
691198 1 10.1638
697135 1 10.0590
702845 1 10.4422
704229 0 10.1451
705975 1 13.3566
711464 0 10.6852
720315 1 10.1484
720467 1 11.2506
720822 1 11.4293
728922 0 10.5419
733520 0 10.6796
737773 0 10.3015
743018 1 10.2271
747743 1 10.2491
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749532 1 10.0420
751547 1 10.9804
753916 0 10.0524
756088 0 10.7244
766044 0 10.7313
768798 0 10.1165
769572 0 11.4103
770513 0 10.2521
783344 1 12.0544
794752 1 10.3281
800106 0 10.4873
800131 1 10.0063
801904 0 10.7886
803453 1 10.6021
807478 0 10.2342
808823 0 10.1804
820197 1 11.9397
829653 1 11.1176
830809 1 12.4973
836205 1 10.2227
837826 1 11.7123
839730 1 10.3122
844063 0 10.2793
846474 1 11.7365
848223 0 10.6659
852200 1 10.2111
855941 1 10.6959
860117 0 10.1069
866363 0 11.1680
869615 0 11.0873
873064 1 10.5181
874972 0 10.1271
875387 1 10.0827
875711 0 10.0009
875912 0 10.1259
880775 1 10.9677
885224 1 10.4887
889569 0 11.7566
892891 1 10.3504
893564 0 10.5319
902565 1 11.7228
906421 0 14.1582
906825 0 10.1341
912185 1 10.2822
914835 0 10.5891
914953 0 11.7723
922740 0 11.5449
923768 0 10.5262
926055 0 11.5670
932119 0 10.0862
933897 0 10.2971
939131 0 10.0446
947358 1 10.3538
949585 1 10.2189
951799 1 11.2776
952441 1 10.3399
960630 0 10.1768
970019 0 10.1832
978889 0 10.2433
986854 0 10.0572
986998 1 10.9197
987176 0 11.2011
987378 0 11.9693
991512 1 11.2957
997859 0 10.0587
1000551 1 11.6582
1001574 0 10.6567
1005869 1 10.3570
1006242 1 10.7595
1008840 0 11.2828
1013123 0 10.9471
1013369 1 10.0937
1013673 0 10.4722
1023410 0 10.4488
1024032 0 11.5033
1024824 0 10.1559
1051114 0 11.2613
1051367 1 10.0231
1052218 0 10.1620
1053002 0 10.9071
1064109 0 10.2390
1064268 0 10.1793
1073957 1 10.0075
1078994 0 11.6327
1079024 0 10.4635
1084298 0 10.0272
1086422 0 10.4864
1086687 1 11.1345
1087611 0 11.4073
1087933 1 11.0981
1088822 1 10.0117
1092124 0 11.1486
1092431 0 10.4033
1093249 1 10.3068
1093426 0 10.7140
1093468 1 10.5505
1093480 1 10.3665
1099362 1 10.7297
1102419 0 10.9757
1103449 0 10.3847
1109693 0 10.1685
1110469 0 10.4360
1119165 0 11.5831
1119461 0 10.6010
1120942 1 11.2811
1121102 0 10.2157
1122781 1 10.4597
1122994 1 10.4105
1124194 0 10.0708
1125349 0 10.1038
1128737 0 10.1847
1128740 0 10.6941
1132575 1 10.2028
1134570 0 10.6812
1149743 1 10.2088
1151914 1 11.3159
1153188 1 10.9542
1157297 1 10.3680
1161248 1 10.1872
1161649 0 10.1200
1171405 1 10.0865
1176222 0 10.9990
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1190544 0 10.4662
1192615 1 10.0505
1194921 1 11.3387
1196877 1 11.3304
1198287 1 11.6353
1198446 0 10.1823
1198972 0 10.1790
1199186 1 10.2791
1205556 1 11.0133
1211931 1 10.6366
1212153 0 10.3858
1212334 0 10.2900
1213703 0 12.5169
1213795 1 10.3633
1216155 1 11.9505
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1223304 1 11.1503
1223666 0 11.0218
1223738 0 10.8870
1224027 0 12.3370
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1244615 1 10.6321
1246347 1 11.1360
1250962 1 10.1098
1254512 1 10.2270
1255795 1 11.2577
1256013 0 10.0330
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1273944 0 10.1618
1278357 1 10.4006
1282255 0 10.0122
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1290317 1 11.9774
1292247 0 10.7262
1298644 1 10.3022
1299292 1 11.7123
1299567 0 11.4607
1300647 0 10.1839
1301986 0 10.5817
1303353 1 10.3524
1308755 0 10.3491
1309374 1 10.3056
1311080 0 10.4330
1313204 1 11.9129
1313960 1 10.0407
1319785 1 10.4191
1323458 0 11.5751
1324121 1 10.1098
1331960 0 10.3171
1333707 1 11.2196
1335465 1 10.3693
1335468 1 10.8449
1336929 0 10.0044
1337520 0 11.2837
1338145 0 10.1246
1338479 1 10.3349
1344640 0 10.9659
1344647 0 11.6798
1360960 0 10.6768
1361132 0 13.9586
1362377 0 10.0331
1362741 1 10.4082
1371408 0 10.5343
1374042 1 10.4247
1383556 0 10.0972
1386481 0 10.1481
1391390 1 10.6508
1391850 1 11.7092
1392453 0 10.0401
1392961 1 13.4497
1393492 0 10.7826
1394548 0 11.4532
1396112 0 11.4607
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1400575 0 11.2711
1404660 1 10.1027
1405852 0 10.3794
1409308 0 11.4597
1412929 1 10.1747
1413752 1 11.0547
1413939 1 10.2672
1415573 1 10.1588
1416233 1 10.9551
1418345 0 10.2854
1418747 1 10.0454
1424708 1 12.4343
1426734 0 10.0647
1433338 1 11.6149
1433731 0 13.1011
1433966 0 11.8489
1441685 1 10.4398
1448035 1 10.2129
1449863 1 11.0709
1455354 0 10.1593
1459057 0 10.0438
1464716 1 11.8774
1464920 0 10.0018
1465160 1 10.1102
1471159 0 10.0406
1475471 1 10.3435
1475700 0 10.1244
1475769 0 10.6930
1477424 0 11.5197
1477933 1 10.7454
1481596 0 10.4157
1483737 1 10.1096
1492321 1 10.5513
1492404 1 11.1228
1493817 0 10.1508
1499294 1 10.3258
1506367 1 11.0340
1507415 0 10.8854
1508140 0 11.1189
1513955 1 10.2813
1521199 1 10.5966
1523064 0 11.3056
1523208 0 11.5296
1526176 0 10.3374
1526941 1 10.7435
1527470 1 10.5524
1527687 0 11.1127
1529768 0 11.9811
1530097 0 12.1128
1530337 0 10.2771
1530482 0 12.3038
1531274 0 12.0416
1531532 0 12.2312
1532764 0 10.3015
1539086 1 11.9371
1544289 1 10.7413
1545071 1 10.0501
1546137 0 10.7625
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1546736 1 11.3989
1552729 1 11.4292
1563717 1 10.5827
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1575023 1 10.2426
1575190 1 13.9054
1579236 0 13.5013
1579542 0 10.2541
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1582946 1 10.1700
1583655 0 11.0181
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1606273 1 10.4277
1617961 0 10.0009
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1621274 1 11.8177
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1633227 0 10.7423
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1633565 1 13.1011
1633958 0 11.6149
1637407 1 10.6331
1637785 1 10.4447
1638183 1 12.3314
1639511 0 10.0734
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1644038 0 10.2949
1647675 1 10.5922
1648421 1 12.1807
1650049 1 10.1007
1651914 0 10.9544
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1671349 0 10.1555
1671938 1 11.7389
1676123 1 11.2017
1678320 0 12.7723
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1691618 1 10.8369
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1693255 1 10.0198
1696176 0 10.6049
1697049 1 10.2502
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1715886 1 14.5049
1717060 0 10.6024
1718389 1 13.6943
1719726 0 10.1439
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1721835 1 10.0065
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1734867 0 12.1570
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1742627 1 11.9256
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1872948 1 10.3630
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1971647 1 10.0070
1975033 1 10.9348
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1981148 0 10.9798
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2005645 0 10.3095
2011335 1 11.4241
2012051 1 12.0093
2021776 1 10.1671
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2034021 0 10.2188
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2039004 1 11.1473
2042022 1 10.2422
2042035 1 10.8588
2044094 1 10.7245
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2046922 0 12.5870
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2061132 0 10.8763
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2102875 1 11.4607
2103785 1 10.3541
2104340 0 10.9247
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2125046 0 10.5402
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2137552 0 10.3027
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2151081 0 11.6966
2153700 0 11.9951
2153945 1 11.0120
2160132 0 10.1237
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