Assignment: GS540 HW5 Name: Alex Eng Email: engal@uw.edu Language: C++ Time: 3.968 sec Nucleotide Histogram: A=1173595 C=271873 G=276739 T=1172998 N=400 Background Frequency: A=0.4053 C=0.0947 G=0.0947 T=0.4053 Count Matrix: -10 271 57 62 307 -9 265 50 63 319 -8 295 52 62 288 -7 280 57 71 289 -6 309 42 89 257 -5 325 38 79 255 -4 332 103 44 218 -3 570 37 35 55 -2 461 62 49 125 -1 422 39 75 161 0 697 0 0 0 1 0 0 0 697 2 0 0 697 0 3 323 55 219 100 4 352 106 101 138 5 258 60 104 275 6 314 62 181 140 7 334 81 86 196 8 251 76 107 263 9 273 89 139 196 10 290 97 83 227 Frequency Matrix: -10 0.3888 0.0818 0.0890 0.4405 -9 0.3802 0.0717 0.0904 0.4577 -8 0.4232 0.0746 0.0890 0.4132 -7 0.4017 0.0818 0.1019 0.4146 -6 0.4433 0.0603 0.1277 0.3687 -5 0.4663 0.0545 0.1133 0.3659 -4 0.4763 0.1478 0.0631 0.3128 -3 0.8178 0.0531 0.0502 0.0789 -2 0.6614 0.0890 0.0703 0.1793 -1 0.6055 0.0560 0.1076 0.2310 0 1.0000 0.0000 0.0000 0.0000 1 0.0000 0.0000 0.0000 1.0000 2 0.0000 0.0000 1.0000 0.0000 3 0.4634 0.0789 0.3142 0.1435 4 0.5050 0.1521 0.1449 0.1980 5 0.3702 0.0861 0.1492 0.3945 6 0.4505 0.0890 0.2597 0.2009 7 0.4792 0.1162 0.1234 0.2812 8 0.3601 0.1090 0.1535 0.3773 9 0.3917 0.1277 0.1994 0.2812 10 0.4161 0.1392 0.1191 0.3257 Weight Matrix: -10 -0.0598 -0.2123 -0.0910 0.1202 -9 -0.0921 -0.4014 -0.0679 0.1755 -8 0.0627 -0.3448 -0.0910 0.0280 -7 -0.0126 -0.2123 0.1045 0.0330 -6 0.1295 -0.6529 0.4305 -0.1363 -5 0.2024 -0.7973 0.2586 -0.1476 -4 0.2331 0.6413 -0.5858 -0.3737 -3 1.0129 -0.8358 -0.9159 -2.3606 -2 0.7067 -0.0910 -0.4305 -1.1761 -1 0.5792 -0.7598 0.1836 -0.8110 0 1.3031 -99.0000 -99.0000 -99.0000 1 -99.0000 -99.0000 -99.0000 1.3031 2 -99.0000 -99.0000 3.3998 -99.0000 3 0.1935 -0.2638 1.7296 -1.4981 4 0.3175 0.6827 0.6130 -1.0334 5 -0.1307 -0.1383 0.6552 -0.0386 6 0.1527 -0.0910 1.4546 -1.0126 7 0.2418 0.2946 0.3811 -0.5272 8 -0.1704 0.2027 0.6963 -0.1030 9 -0.0492 0.4305 1.0737 -0.5272 10 0.0380 0.5547 0.3298 -0.3154 Maximum Score: 17.3259716068 Score Histogram CDS: -3 1 -1 2 0 6 1 7 2 12 3 19 4 34 5 58 6 82 7 109 8 104 9 90 10 83 11 56 12 23 13 9 14 2 Score Histogram All: -7 1 -6 3 -5 41 -4 325 -3 870 -2 2310 -1 4248 0 7934 1 11173 2 13571 3 15283 4 15946 5 14364 6 12240 7 9108 8 6078 9 3254 10 1559 11 671 12 198 13 32 14 8 lt-50 5671953 Position List: 2776 1 11.6837 4076 1 10.0316 5519 1 10.6357 5566 1 10.8327 5884 1 11.7709 6062 1 10.2017 6335 0 11.2958 6400 1 10.6851 6574 1 11.7709 6641 1 10.9822 6752 1 10.2017 7090 1 10.6851 7361 1 10.2119 7669 0 10.8348 8405 0 10.2646 9130 1 10.8244 9297 1 11.2861 20240 0 10.8816 21851 0 12.5330 22071 0 11.3617 22651 0 11.5611 23425 0 10.8244 23922 0 11.8351 24081 0 11.0979 24257 0 11.0614 25033 0 10.1001 25216 0 10.1243 25488 0 11.1842 25562 0 10.5046 25644 0 10.0837 25725 0 11.2755 25903 0 12.1453 25927 0 10.4242 29667 0 10.1850 30749 1 10.1472 30823 0 10.1978 32188 1 11.4580 32264 1 10.4939 34676 1 10.0391 36066 0 10.4251 36510 1 10.3348 36687 1 10.1499 36753 1 12.6016 36998 1 10.5550 37506 1 10.7390 37993 1 10.4530 38338 0 10.2052 38511 1 12.2817 39300 1 10.0705 39353 1 10.0612 39373 0 13.1774 39578 1 11.3867 39612 1 11.4910 39747 1 10.6788 40062 1 10.1586 40419 1 10.4031 40920 1 10.3921 41142 1 10.4516 41762 1 12.2008 42447 1 11.5868 42968 1 10.2345 42992 1 10.8889 45638 0 10.1229 45878 1 10.0404 48757 1 10.4512 48831 0 10.1472 51200 0 10.0514 51919 0 10.1472 54211 1 10.1472 54886 1 10.6225 56568 0 11.3479 58021 1 11.7144 63252 1 11.0072 63295 1 10.8925 63328 1 12.3502 68218 0 12.0582 68726 1 12.0567 69176 1 10.2128 70297 1 11.0176 72846 1 11.0337 75403 0 11.9733 76583 0 10.7676 80430 0 10.2755 83274 0 10.3890 85749 1 10.4291 86223 1 10.8793 86522 1 10.3038 90598 1 11.6901 91704 1 11.5350 91778 1 12.2954 92381 0 10.2518 92613 1 10.5071 92803 1 10.5948 92870 1 10.8487 92970 1 10.2846 93152 0 10.2713 93349 1 10.0356 96992 1 10.7377 98231 1 10.7364 98368 1 10.2610 100178 0 10.3102 100380 1 10.9879 103161 1 10.3429 103786 0 11.8354 105450 0 10.2974 106099 0 10.5303 106360 0 10.3259 107030 1 10.6114 107454 0 10.7690 108066 0 10.6591 108198 0 10.3299 108353 0 11.2424 108537 0 11.2573 108974 0 10.7174 109526 0 10.0377 114248 0 12.5210 122596 0 11.3414 124309 1 10.0030 129954 0 10.1431 131012 1 10.1268 131226 0 10.6983 131644 1 10.4227 132358 1 10.3146 132658 1 11.5832 135479 1 10.2317 136085 1 10.0450 136955 1 11.5249 137257 1 10.5005 138259 1 10.0121 138415 1 11.0290 139533 1 10.0222 145431 0 10.7805 146261 0 10.8223 146474 0 12.6083 147917 0 10.9564 148322 0 12.2676 148329 0 10.3223 148821 1 10.7830 149228 0 10.1038 153778 0 10.2440 153808 0 11.4599 156151 0 10.2774 157829 1 10.2293 158943 0 10.4079 159906 0 11.7022 162863 0 10.2753 163951 0 12.1268 165085 1 11.4305 165165 1 10.9711 165604 1 11.3958 165987 1 10.8018 166240 1 10.7599 167905 1 12.3208 169339 1 10.0166 169977 0 11.2251 171434 1 10.0189 172157 1 12.4759 173488 1 11.1896 173597 1 10.3775 173687 1 12.5719 174198 1 11.6223 174356 1 10.2707 178363 0 11.0420 179000 0 10.4906 181514 0 11.4095 181658 0 10.3756 182668 1 11.0675 183497 0 11.4301 184355 0 10.7826 185622 1 10.0398 186156 1 10.2456 187558 1 10.1088 188328 1 10.6301 189198 1 10.2264 190023 1 10.4393 190188 1 10.6311 190230 1 10.4517 190268 1 10.7461 190360 0 10.7806 191073 0 12.1138 191758 0 10.1723 192683 1 12.2340 195739 1 12.7157 197745 1 10.9911 197889 1 11.2800 198350 1 10.4184 199659 1 10.0948 200303 1 12.7559 200321 1 10.2428 200339 1 10.2428 200357 1 11.6330 200375 1 10.2428 200393 1 11.1313 200955 1 11.6525 201495 1 10.9001 203079 1 10.6061 203304 1 10.1802 203355 1 12.2931 203769 0 10.6913 203928 1 10.0207 204572 1 10.8611 205563 1 10.4501 206093 0 11.1413 206649 1 10.1479 207129 0 10.8942 207602 1 11.0464 211746 1 11.2511 215210 0 12.4419 215771 0 11.0078 215969 0 10.4848 216804 0 10.1210 217825 1 11.4844 218599 1 10.4654 219261 1 10.9381 219733 1 10.0001 219888 1 10.8185 222681 0 10.0154 222995 1 10.6410 224006 1 10.1082 226292 1 12.0570 227280 1 10.0329 228308 1 10.1168 229792 1 11.0503 231307 1 11.4835 233256 1 10.2295 236283 1 12.4403 236982 1 10.6635 239990 0 11.5755 240483 1 12.0599 240637 1 12.4614 241484 1 10.5632 241810 1 12.6735 242196 1 11.9290 242558 1 10.7742 242694 1 10.6209 242721 1 10.1950 246415 1 11.6192 249269 0 11.0340 249582 0 10.7574 250469 1 11.7341 250842 0 10.7666 250899 0 10.5526 252656 1 10.7905 253098 1 10.2776 256718 1 10.0660 259727 0 10.5250 262248 1 10.9809 262448 1 10.3868 265128 1 10.3518 265395 1 11.2241 265464 1 11.3603 266385 0 10.2118 266672 0 10.9115 266868 1 10.2156 270033 0 10.7374 270424 1 10.3895 270650 1 11.7133 270779 1 12.4141 271020 0 11.7722 274134 0 11.2652 275216 1 10.4125 275758 1 10.4512 278111 1 10.3502 278246 1 10.8019 281041 0 11.9527 285231 1 10.7248 289739 1 12.1811 289905 1 10.1041 291018 1 10.1086 293634 0 11.5468 295938 0 10.9083 296588 1 12.3560 299382 0 10.1639 300106 1 10.1637 302538 0 10.5071 302558 0 10.6901 303699 0 10.4831 304746 0 10.3712 306069 0 10.3907 306849 0 10.2325 307277 0 10.3513 310169 0 10.9167 310971 0 11.6334 311739 0 10.6329 311811 0 12.1145 312053 0 10.9831 313835 0 10.3743 314982 1 11.2683 316266 1 10.1237 319884 1 12.6546 322074 1 10.2865 322325 0 10.5515 322688 1 10.4722 323846 0 11.3131 324036 0 10.8855 325247 0 11.5153 325979 1 11.6168 326508 1 10.6583 327348 0 10.6609 328310 0 10.0139 328402 0 12.7154 331057 0 10.1212 331988 1 10.5724 337588 1 10.3425 337720 1 10.8414 338161 0 10.1445 338273 0 10.1944 340348 1 11.5162 341524 1 10.1815 341683 1 10.1700 341751 1 11.2827 341826 1 10.9247 342856 1 11.2370 342916 1 10.0218 344557 1 12.6766 345347 0 10.0422 346123 1 10.4430 346213 0 10.5697 346937 0 10.0149 348166 0 11.7857 348302 0 10.0142 349134 1 11.5068 349808 1 10.2072 349928 1 10.0883 351455 1 10.8230 352479 1 11.4751 353343 1 10.7823 355942 1 10.3874 356679 0 10.5241 357114 0 10.4752 357195 0 10.8338 363642 1 10.1437 366617 1 10.7563 367133 1 10.0436 368800 0 11.1925 373111 1 11.2491 373808 1 10.3777 375515 1 10.0374 375549 1 10.8984 378015 1 12.1477 378512 1 10.3547 378926 1 10.5301 378941 1 12.6553 378984 1 10.8705 379002 1 11.0562 380951 0 10.4862 383333 0 10.9293 384220 1 11.0902 384267 1 10.5286 384677 0 10.0231 385192 1 11.2397 385246 1 10.1173 385303 1 10.4802 385345 1 13.7114 385707 0 10.1088 385741 0 10.7249 386184 1 10.4019 389095 1 11.1786 389098 1 12.2787 389772 1 10.0830 390274 0 10.5357 391291 1 10.8615 392435 0 11.2894 395997 1 10.0297 396684 1 10.7011 400163 1 10.7238 400194 1 10.5720 401725 1 10.6280 402299 0 11.9370 403077 0 10.1677 409469 1 10.3653 410996 1 10.9834 411070 1 11.9965 412805 1 10.4763 414354 0 10.3707 415537 0 11.1103 416752 1 10.2805 418621 0 10.0922 420377 0 11.3852 423469 0 10.7338 424745 0 10.4444 424947 0 10.4371 426218 1 10.1145 426524 1 10.3792 426982 0 10.7591 427938 1 10.3918 428822 1 11.2266 428921 1 10.1413 430116 1 10.9295 432440 0 11.3964 432617 0 10.8241 433225 1 11.9637 433648 0 11.6704 434905 0 10.3081 435334 0 10.5086 435398 0 11.8186 436334 1 11.0019 437682 0 10.2170 439704 1 11.8378 440516 0 11.0186 441029 0 10.4056 445836 0 10.5898 446019 0 11.5177 450764 0 10.1212 451051 0 10.8078 451584 1 10.4046 451902 1 10.9924 456098 1 10.2877 456439 1 10.3274 457415 0 10.2666 457542 1 10.7886 459179 0 10.3469 460077 0 10.0440 461094 1 10.2162 461896 0 11.0858 462476 0 10.3574 465204 0 12.0405 468468 1 10.6916 468571 1 10.6710 468639 1 10.9846 476163 1 11.7640 477714 1 10.8435 479417 1 10.0341 479946 0 10.4851 481010 0 10.1294 481910 0 11.4069 482766 1 10.4417 482957 1 10.0387 483431 1 10.4428 483766 1 10.1824 484563 0 10.7983 485158 1 10.1863 488839 1 11.3376 488998 0 11.7649 489749 0 10.8144 491526 1 10.2697 492577 0 10.0736 493004 0 10.0689 494262 1 10.0015 496255 0 10.4097 497258 0 10.1308 503588 0 10.3080 503820 0 10.0340 507670 0 11.3354 509934 0 10.0971 511139 0 10.2060 512040 0 10.1553 512360 0 11.5515 512512 1 10.4565 514165 1 10.6060 514187 1 12.1170 515833 1 11.9722 517333 1 12.6415 522888 0 10.7093 523457 0 10.2841 524002 0 10.7166 529482 1 10.4368 529879 1 11.4796 532343 0 10.5072 536554 1 11.1167 537182 1 11.5309 537478 1 10.8002 538652 1 10.7605 539345 1 11.3228 539477 1 11.5544 539734 1 10.3931 541907 1 10.4075 542767 1 10.6265 543332 1 10.7908 543469 1 10.1102 544961 1 10.9763 546238 0 11.3804 549119 0 12.3781 550734 0 10.2754 551088 0 10.0196 551434 0 10.4701 552353 0 10.6476 552490 0 10.2471 552906 0 10.9668 554372 1 11.2293 556935 0 10.5528 560655 0 10.6698 562184 0 10.3862 562906 1 10.5860 563193 0 10.0653 563232 0 10.7598 563460 0 10.3005 568918 1 10.8463 570580 1 10.1150 574921 1 10.8370 576159 1 11.0186 576309 1 10.5553 578858 0 11.4079 581088 1 11.4543 582073 0 10.5541 582213 1 10.2111 583633 1 10.6747 584038 1 10.0447 584426 0 10.6977 584992 1 10.4625 585091 1 12.5914 589045 1 10.2735 589057 1 11.2489 590105 1 10.8223 590267 1 10.5746 591392 1 10.3128 592767 1 10.5665 592919 1 10.0141 594866 1 10.3187 595026 0 11.1287 596669 1 10.5987 596909 1 10.3338 597935 1 10.4873 600576 1 10.1021 601619 1 10.2035 601757 1 11.3226 604437 0 10.4475 604742 0 10.0462 604917 0 10.1695 605180 0 10.6775 605472 1 10.5397 607501 1 10.9154 608453 0 10.0165 615334 1 11.8431 617551 0 10.9772 619530 0 11.3379 620885 0 10.0689 624750 1 10.6845 627278 1 11.1151 627326 1 10.4052 627882 1 10.1238 629679 0 12.1165 629987 1 11.0715 630089 1 11.3815 633058 1 11.4369 634552 0 11.0461 637604 1 10.3260 638573 0 10.8667 641767 0 11.5148 645417 0 10.9283 648454 0 10.0796 649559 0 10.3029 650040 1 10.7553 650093 1 10.5395 651354 0 10.1837 653136 0 10.3021 653937 1 10.2542 655563 1 10.1352 660640 1 10.7742 661008 1 10.1812 670624 1 11.4867 670973 0 10.9751 671140 0 10.6501 671278 0 11.2083 674193 0 10.1105 674240 0 11.6527 674852 0 12.0712 675711 0 10.3324 677459 0 10.4444 678093 0 10.1323 679193 1 12.0291 679298 1 10.0607 681979 1 11.8519 682046 0 12.5147 683541 0 10.1884 684168 0 10.3197 686009 1 10.9723 686955 0 10.8506 687058 0 11.0915 687654 0 10.6023 687772 0 10.6738 694057 0 11.3942 694583 1 10.1441 694792 1 10.8179 695769 1 10.1646 699413 1 10.5119 701998 1 10.1915 702274 1 12.0169 702847 1 10.1317 704352 1 11.1256 706645 1 11.0435 707954 0 10.0921 710178 0 10.5604 711729 0 10.9949 712484 1 10.0544 712693 0 11.8674 714048 0 12.6758 714070 1 10.0679 714436 0 11.0437 716175 0 10.5792 716622 0 12.5746 717786 1 12.7759 722285 0 10.6930 723434 0 11.0641 723522 0 10.4638 724385 0 14.9030 724389 0 10.3640 724955 0 10.7252 725276 0 11.4552 725546 0 10.9386 725619 0 10.6140 726045 0 11.0469 726057 0 10.4683 726729 0 10.9355 728215 0 10.1060 728535 0 10.3733 728646 0 12.0532 729512 0 11.7899 733552 0 10.2951 733653 0 12.7452 736774 1 12.1857 736850 0 10.3131 739626 0 12.5854 742219 0 10.2232 744168 1 11.5407 744471 1 10.8859 746683 0 10.0947 748475 1 10.5459 749276 0 11.3369 750327 0 10.0411 751071 0 10.3092 751651 0 11.7137 752358 0 10.8555 753192 1 10.0793 753880 0 10.9253 756884 0 10.4365 757190 0 10.5282 757456 0 11.4463 757483 0 11.0536 758233 0 10.1143 758756 0 11.2975 760251 1 11.1548 761072 1 11.3400 765604 1 10.1484 767948 0 10.1072 768112 1 10.2096 768138 0 11.5176 768422 0 11.2304 769184 0 10.2428 769405 0 10.0071 771382 1 10.5213 772646 1 10.5606 775499 1 10.5250 775596 1 11.3728 778601 0 10.2125 785309 0 10.1600 785857 0 10.0955 788651 1 12.3214 789840 1 11.5351 792486 1 10.9084 792636 1 10.0841 792886 1 10.9822 797141 1 10.6645 797156 1 10.1834 797566 1 11.5279 799263 1 10.5563 801384 1 10.5947 803614 0 10.1892 805385 1 10.9595 806117 0 11.8030 810608 0 10.0008 811258 0 11.1785 811666 0 10.5319 811690 1 10.3028 811822 0 10.0846 813723 0 10.4082 814027 0 11.4977 814111 0 11.6761 817960 1 10.8582 817975 1 12.9091 820473 0 12.5790 820782 1 12.7160 821092 0 10.5911 821392 0 10.0848 823742 0 10.2233 824745 0 10.4812 828199 0 10.5194 828708 0 10.5630 829214 1 10.8594 829428 0 11.2895 830109 1 10.0611 831192 0 11.7044 831377 0 10.1946 834278 1 10.5348 836230 1 12.2892 837139 0 11.1341 838508 0 10.6356 838802 0 10.3851 839491 1 10.5989 840668 1 10.5264 842661 1 12.9593 844337 1 10.2765 845247 0 11.8488 846238 1 10.8442 847568 0 11.1984 847916 0 10.0339 849996 0 10.9996 851113 0 11.1866 851297 0 12.8940 851988 0 10.0378 852237 0 10.9946 853287 0 11.4819 854374 1 10.3749 855901 0 10.0273 856191 0 10.5189 857538 1 11.3515 858264 0 10.0998 861457 1 10.9628 863679 1 11.9537 864270 1 10.2250 865112 1 10.6015 865755 1 10.5705 867150 1 11.5365 867206 1 10.7002 868841 1 12.1775 869115 1 11.2820 869550 1 11.2820 870026 1 11.2143 871793 1 11.5036 872868 1 11.2736 879822 1 10.5693 881400 1 10.0213 881562 1 10.1243 885076 0 10.2837 885474 1 10.0632 888996 0 11.9687 889463 1 11.4135 891662 0 11.1201 898943 1 10.3995 900671 0 10.1856 903011 0 10.1360 903020 0 10.6998 903932 0 11.0361 904018 0 12.2111 904540 0 10.4454 904700 0 10.2884 904703 0 10.0795 906611 1 10.0953 907481 0 10.7716 908899 0 10.2403 909390 1 10.8728 910047 1 10.2099 911981 0 10.7700 912050 1 10.1465 913848 0 12.8451 916297 1 11.6118 916568 0 12.4014 917413 0 10.4768 919639 1 10.5730 921739 0 10.0143 921911 0 11.7665 922241 0 10.1329 922907 0 10.0061 924427 0 10.4864 925295 0 10.5889 925568 0 10.1387 926405 0 10.0738 926570 0 10.7281 926603 0 10.7281 926926 0 11.0549 927806 0 11.3906 928020 0 10.1807 929431 0 10.1443 930830 0 10.2354 931587 0 11.1328 932589 0 10.0583 932921 0 11.5547 933274 1 10.1647 935826 0 10.0329 936398 0 10.7766 937590 1 10.9354 940286 0 12.5228 940316 0 11.6734 942107 0 11.1690 942145 0 11.5576 944094 0 10.1231 949293 0 12.1146 953939 0 10.7147 954307 0 10.5865 956095 0 10.9954 958658 1 11.1503 958700 1 10.0265 959236 1 11.4238 959745 0 10.5235 960769 1 11.3699 961656 1 10.9703 962304 0 10.2390 963376 1 13.3499 963984 1 10.2703 964358 1 10.6989 964871 0 11.4132 968024 0 10.1047 976462 0 10.9814 979360 1 10.3409 980546 1 10.5053 983672 0 10.5045 984484 1 12.0956 985522 1 10.3499 986338 1 11.3187 986876 0 10.4433 989118 0 12.7312 991453 1 11.8176 991670 1 10.2645 992674 1 10.0628 993612 1 10.6972 993623 0 10.1574 993787 1 11.1590 994899 1 10.2508 998921 0 10.0900 1000684 1 10.9983 1001241 1 11.7002 1001723 1 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